Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 58
Gene Symbol: ACTA1
ACTA1
0.010 GeneticVariation disease BEFREE We conclude that mutations in ACTA1 can cause pathologic features consistent with myofibrillar myopathy, and mutations in ACTA1 should be considered in patients with severe congenital hypotonia associated with muscle weakness and features of myofibrillar myopathy. 25913210 2015
Entrez Id: 1822
Gene Symbol: ATN1
ATN1
0.010 GeneticVariation disease BEFREE To distinguish this subset of affected individuals from the DRPLA diagnosis, we suggest using the term CHEDDA (congenital hypotonia, epilepsy, developmental delay, digit abnormalities) to classify the condition. 30827498 2019
Entrez Id: 773
Gene Symbol: CACNA1A
CACNA1A
0.010 Biomarker disease BEFREE Genetic testing of CACNA1A in patients with congenital hypotonia and developmental delay may be warranted. 26739101 2016
Entrez Id: 1139
Gene Symbol: CHRNA7
CHRNA7
0.010 GeneticVariation disease BEFREE Absence of the Transient Receptor Potential Cation Channel, Subfamily M, Member 1 (TRPM1) gene product is proposed as a possible mechanism for the severe visual impairment; absence of CHRNA7 (alpha7-nicotinic receptor subunit) as a cause of the refractory seizures and severe cognitive impairment; and deletion of MTMR10 and/or MTMR15 (encoding myotubularin related proteins) alone or combined with other homozygously deleted genes as a cause for the congenital hypotonia with areflexia. 20425840 2010
Entrez Id: 1183
Gene Symbol: CLCN4
CLCN4
0.010 GeneticVariation disease BEFREE X-linked mental retardation with neonatal hypotonia in a French family (MRX15): gene assignment to Xp11.22-Xp21.1. 8826458 1996
Entrez Id: 8506
Gene Symbol: CNTNAP1
CNTNAP1
0.010 GeneticVariation disease BEFREE Two novel variants in CNTNAP1 in two siblings presenting with congenital hypotonia and hypomyelinating neuropathy. 27782105 2017
Entrez Id: 54205
Gene Symbol: CYCS
CYCS
0.010 Biomarker disease BEFREE Hypotonia-cystinuria syndrome (HCS, OMIM606407) is characterized by infantile hypotonia, poor feeding, and growth hormone deficiency. 23794250 2013
Entrez Id: 22909
Gene Symbol: FAN1
FAN1
0.010 Biomarker disease BEFREE Absence of the Transient Receptor Potential Cation Channel, Subfamily M, Member 1 (TRPM1) gene product is proposed as a possible mechanism for the severe visual impairment; absence of CHRNA7 (alpha7-nicotinic receptor subunit) as a cause of the refractory seizures and severe cognitive impairment; and deletion of MTMR10 and/or MTMR15 (encoding myotubularin related proteins) alone or combined with other homozygously deleted genes as a cause for the congenital hypotonia with areflexia. 20425840 2010
Entrez Id: 2632
Gene Symbol: GBE1
GBE1
0.010 Biomarker disease BEFREE This case confirms previous observations that GBE deficiency ought to be included in the differential diagnosis of congenital hypotonia and that the phenotype correlates with the 'molecular severity' of the mutation. 20833045 2010
Entrez Id: 3141
Gene Symbol: HLCS
HLCS
0.010 Biomarker disease BEFREE Hypotonia-cystinuria syndrome (HCS, OMIM606407) is characterized by infantile hypotonia, poor feeding, and growth hormone deficiency. 23794250 2013
Entrez Id: 3295
Gene Symbol: HSD17B4
HSD17B4
0.010 Biomarker disease BEFREE A survey of the clinical consequences of these defects indicates that defects in the acyl-CoA oxidase and D-BP can produce neonatal hypotonia, seizures in early infancy, retinopathy and progressive neurological dysfunction with leukodystrophy on imaging. 11356171 2001
Entrez Id: 51305
Gene Symbol: KCNK9
KCNK9
0.010 Biomarker disease BEFREE Patients with KCNK9 imprinting syndrome demonstrate congenital hypotonia, variable cleft palate, normal MRIs and EEGs, delayed development, and feeding problems. 27151206 2016
Entrez Id: 3908
Gene Symbol: LAMA2
LAMA2
0.010 Biomarker disease BEFREE MDC1A usually presents as a severe neonatal hypotonia and failure to thrive. 30055037 2018
Entrez Id: 54551
Gene Symbol: MAGEL2
MAGEL2
0.010 GeneticVariation disease BEFREE Patients with MAGEL2 variants shared several features with PWS, such as neonatal hypotonia, poor suck, and obesity; however, there were also unique features, including arthrogryposis and a failure to acquire meaningful words. 31791363 2019
Entrez Id: 4204
Gene Symbol: MECP2
MECP2
0.140 GeneticVariation disease BEFREE Male patients with large duplications of the methyl CpG-binding protein 2 (MECP2) gene have been identified with a characteristic phenotype consisting of infantile hypotonia replaced by spasticity, developmental delay, severe mental retardation and recurrent respiratory infections. 21821449 2012
Entrez Id: 4204
Gene Symbol: MECP2
MECP2
0.140 GeneticVariation disease BEFREE Duplications leading to functional disomy of chromosome Xq28, including MECP2 as the critical dosage-sensitive gene, are associated with a distinct clinical phenotype in males, characterized by severe mental retardation, infantile hypotonia, progressive neurologic impairment, recurrent infections, bladder dysfunction, and absent speech. 22522176 2012
Entrez Id: 4204
Gene Symbol: MECP2
MECP2
0.140 CausalMutation disease CLINVAR
Entrez Id: 4204
Gene Symbol: MECP2
MECP2
0.140 Biomarker disease BEFREE Apneic crises: a clue for MECP2 testing in severe neonatal hypotonia-respiratory failure. 22497713 2012
Entrez Id: 4204
Gene Symbol: MECP2
MECP2
0.140 GeneticVariation disease BEFREE Duplication of MECP2 causes a recently described X-linked mental retardation syndrome, of which the typical features are infantile hypotonia, poor speech development, recurrent infections, epilepsy, and progressive spasticity. 23248047 2012
Entrez Id: 4534
Gene Symbol: MTM1
MTM1
0.020 GeneticVariation disease BEFREE An autosomal dominant form of CNM results from mutations in the gene encoding dynamin 2 (DNM2), and loss-of-function mutations in the gene encoding myotubularin (MTM1) result in X-linked CNM (XLCNM, also called myotubular myopathy), which promotes severe neonatal hypotonia and early death. 24569376 2014
Entrez Id: 4534
Gene Symbol: MTM1
MTM1
0.020 Biomarker disease BEFREE Absence of the Transient Receptor Potential Cation Channel, Subfamily M, Member 1 (TRPM1) gene product is proposed as a possible mechanism for the severe visual impairment; absence of CHRNA7 (alpha7-nicotinic receptor subunit) as a cause of the refractory seizures and severe cognitive impairment; and deletion of MTMR10 and/or MTMR15 (encoding myotubularin related proteins) alone or combined with other homozygously deleted genes as a cause for the congenital hypotonia with areflexia. 20425840 2010
Entrez Id: 54893
Gene Symbol: MTMR10
MTMR10
0.010 GeneticVariation disease BEFREE Absence of the Transient Receptor Potential Cation Channel, Subfamily M, Member 1 (TRPM1) gene product is proposed as a possible mechanism for the severe visual impairment; absence of CHRNA7 (alpha7-nicotinic receptor subunit) as a cause of the refractory seizures and severe cognitive impairment; and deletion of MTMR10 and/or MTMR15 (encoding myotubularin related proteins) alone or combined with other homozygously deleted genes as a cause for the congenital hypotonia with areflexia. 20425840 2010
Entrez Id: 259232
Gene Symbol: NALCN
NALCN
0.050 GeneticVariation disease BEFREE Biallelic mutations in NALCN are responsible for infantile hypotonia with psychomotor retardation and characteristic facies 1 (IHPRF1). 29968795 2018
Entrez Id: 259232
Gene Symbol: NALCN
NALCN
0.050 Biomarker disease BEFREE Loss-of function mutations in NALCN on chromosome 13q, a sodium leak channel that maintains baseline neuronal excitability, cause infantile hypotonia with psychomotor retardation and characteristic faces 1 (IHPRF1, OMIM #615419). 29168298 2018
Entrez Id: 259232
Gene Symbol: NALCN
NALCN
0.050 GeneticVariation disease BEFREE Importantly, NALCN mutations lead to complex neurodevelopmental syndromes, including infantile hypotonia with psychomotor retardation and characteristic facies (IHPRF) and congenital contractures of limbs and face, hypotonia and developmental delay (CLIFAHDD), which are recessively and dominantly inherited, respectively. 31409833 2019