Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 4790
Gene Symbol: NFKB1
NFKB1
0.010 AlteredExpression disease BEFREE Two such genes, MYD88 and CD79B, implicate the involvement of the NF-kB (nuclear factor kappa-light-chain enhancer of activated B cells) pathway, and targeted agents to this pathway are currently being used in the treatment of relapsed/refractory PCNSL. 31592789 2019
Entrez Id: 10206
Gene Symbol: TRIM13
TRIM13
0.010 Biomarker disease BEFREE The CAR-T Therapy Tisagenlecleucel Is Safe in Secondary CNS Lymphoma. 31350326 2019
Entrez Id: 6363
Gene Symbol: CCL19
CCL19
0.010 Biomarker disease BEFREE Therefore, CCL19-CCR7 interactions may underlie an increased age-related risk for CNSL. 31526758 2019
Entrez Id: 4155
Gene Symbol: MBP
MBP
0.010 Biomarker disease BEFREE We measured CSF cell counts; concentrations of proteins, glucose, interleukin (IL)-6, IL-10, soluble IL-2 receptor (sIL-2R), and myelin basic protein; and IgG index in patients with multiple sclerosis (MS, n = 64), neuromyelitis optica spectrum disorder (NMOSD, n = 35), tumefactive demyelinating lesion (TDL, n = 17), CNS lymphoma ( n = 12), or glioma ( n = 10). 28657431 2018
Entrez Id: 567
Gene Symbol: B2M
B2M
0.010 Biomarker disease BEFREE CXCL-13, beta-2-microglobulin and neopterin have the highest potential in diagnosing CNS lymphoma, but further study is still needed before they can be used in clinical practice. 29808930 2018
Entrez Id: 6196
Gene Symbol: RPS6KA2
RPS6KA2
0.010 Biomarker disease BEFREE We measured mTOR activity with immunohistochemistry for p-mTOR and its downstream effectors p(T389)-p70S6K1, p-S6, and p-4E-BP1 in 31 cases of PCNSL and 51 cases of systemic diffuse large B-cell lymphoma (DLBCL) and evaluated alternative S6 phosphorylation pathways with p-RSK, p(T229)-p70S6K1, and PASK antibodies. 29361117 2018
Entrez Id: 1978
Gene Symbol: EIF4EBP1
EIF4EBP1
0.010 Biomarker disease BEFREE We measured mTOR activity with immunohistochemistry for p-mTOR and its downstream effectors p(T389)-p70S6K1, p-S6, and p-4E-BP1 in 31 cases of PCNSL and 51 cases of systemic diffuse large B-cell lymphoma (DLBCL) and evaluated alternative S6 phosphorylation pathways with p-RSK, p(T229)-p70S6K1, and PASK antibodies. 29361117 2018
Entrez Id: 23178
Gene Symbol: PASK
PASK
0.010 Biomarker disease BEFREE Our findings also suggest a potential role of PASK in the pathomechanism of PCNSL and in DLBCL. 29361117 2018
Entrez Id: 55607
Gene Symbol: PPP1R9A
PPP1R9A
0.010 Biomarker disease BEFREE To address the role of chronic antigenic stimulation in primary central nervous system lymphoma (PCNSL), we searched for autoantigens and identified sterile α-motif domain containing protein 14 (SAMD14) and neural tissue-specific F-actin binding protein I (neurabin-I) as autoantigenic targets of the B-cell receptors (BCRs) from 8/12 PCNSLs. 30249786 2018
Entrez Id: 84939
Gene Symbol: PWWP3A
PWWP3A
0.010 Biomarker disease BEFREE A total 45 cases of primary central nervous system lymphoma (PCNS)/DLBCL were selected, and immunohistochemistries for CD10, Bcl-6, MUM1, and Ki-67 were performed. 27490760 2018
Entrez Id: 407031
Gene Symbol: MIR30C1
MIR30C1
0.010 Biomarker disease BEFREE Our data suggest that miR-30c detected in the CSF can serve as biomarker for distinction between PCNSL and SCNSL. 29327175 2018
Entrez Id: 3417
Gene Symbol: IDH1
IDH1
0.010 Biomarker disease BEFREE The SRR system had superior PCNSL and GBM differentiation performance compared with some advanced imaging techniques and yielded 11% better performance for estimating IDH1 compared with the traditional radiomics methods. 29610069 2018
Entrez Id: 6197
Gene Symbol: RPS6KA3
RPS6KA3
0.010 Biomarker disease BEFREE We measured mTOR activity with immunohistochemistry for p-mTOR and its downstream effectors p(T389)-p70S6K1, p-S6, and p-4E-BP1 in 31 cases of PCNSL and 51 cases of systemic diffuse large B-cell lymphoma (DLBCL) and evaluated alternative S6 phosphorylation pathways with p-RSK, p(T229)-p70S6K1, and PASK antibodies. 29361117 2018
Entrez Id: 51477
Gene Symbol: ISYNA1
ISYNA1
0.010 Biomarker disease BEFREE The expression of inositol 3-phosphate synthase (ISYNA1) was significantly higher in gliomas than in PCNSLs (p < 0.05), suggesting that the increased level of mIns in glioma is due to high expression of ISYNA1, the rate-limiting enzyme in the mIns-producing pathway. 29143277 2018
Entrez Id: 10153
Gene Symbol: CEBPZ
CEBPZ
0.010 Biomarker disease BEFREE Hypervascular primary central nervous system lymphoma showed similar leakage-corrected normalized CBV and leakage-corrected CBV compared with glioblastoma (<i>P</i> > .05); however, primary central nervous system lymphoma exhibited a significantly higher extraction fraction (<i>P</i> < .001) and CBF (<i>P</i> = .01) and shorter MTT (<i>P</i> < .001) than glioblastoma. 30026384 2018
Entrez Id: 435
Gene Symbol: ASL
ASL
0.010 GeneticVariation disease BEFREE ASL-PWI performs well (AUC > 0.8) in differentiating PCNSL from GBM. 29619520 2018
Entrez Id: 10672
Gene Symbol: GNA13
GNA13
0.010 GeneticVariation disease BEFREE Mutations of the CD79B gene were associated with an inferior progression-free survival (PFS), and GNA13 gene mutations were associated with a shorter PFS and overall survival (OS) in PCNSL patients (P < .05). 30227305 2018
Entrez Id: 8085
Gene Symbol: KMT2D
KMT2D
0.010 Biomarker disease BEFREE In summary, we identified highly recurrent genetic lesions in CD79B and KMT2D, components of the NF-κB pathway, in PCNSL and validated the expression of PIM1 and MYD88 related to poor survival, thereby providing novel insights into the pathogenesis and precision medicine of PCNSL. 30227305 2018
Entrez Id: 407032
Gene Symbol: MIR30C2
MIR30C2
0.010 Biomarker disease BEFREE Our data suggest that miR-30c detected in the CSF can serve as biomarker for distinction between PCNSL and SCNSL. 29327175 2018
Entrez Id: 201191
Gene Symbol: SAMD14
SAMD14
0.010 Biomarker disease BEFREE Hyper-<i>N</i>-glycosylated SAMD14 and neurabin-I as driver autoantigens of primary central nervous system lymphoma. 30249786 2018
Entrez Id: 6195
Gene Symbol: RPS6KA1
RPS6KA1
0.010 Biomarker disease BEFREE We measured mTOR activity with immunohistochemistry for p-mTOR and its downstream effectors p(T389)-p70S6K1, p-S6, and p-4E-BP1 in 31 cases of PCNSL and 51 cases of systemic diffuse large B-cell lymphoma (DLBCL) and evaluated alternative S6 phosphorylation pathways with p-RSK, p(T229)-p70S6K1, and PASK antibodies. 29361117 2018
Entrez Id: 50943
Gene Symbol: FOXP3
FOXP3
0.010 AlteredExpression disease BEFREE The prognostic role of CD68 and FoxP3 expression in patients with primary central nervous system lymphoma. 28508176 2017
Entrez Id: 6513
Gene Symbol: SLC2A1
SLC2A1
0.010 AlteredExpression disease BEFREE The putative biological mechanism might involve differential GLUT1 expression between hyperglycemic and normal states in patients with PCNSL. 28058711 2017
Entrez Id: 25998
Gene Symbol: IBTK
IBTK
0.010 Biomarker disease BEFREE <b/> In this issue Grommes and colleagues elegantly show that the irreversible inhibitor of Bruton tyrosine kinase, ibrutinib, promotes a high proportion of durable responses in primary central nervous system lymphoma, a type of diffuse large B-cell lymphoma (DLBCL), and also in secondary DLBCL relapsing to the central nervous system. 28864640 2017
Entrez Id: 968
Gene Symbol: CD68
CD68
0.010 AlteredExpression disease BEFREE Therefore, we identified a prognostic significance of high CD68 expression in PCNSL, which suggests a need for further clinical trials and biological studies on the role of PCNSL tumor microenvironment. 28508176 2017