Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 100188340
Gene Symbol: AOS
AOS
0.020 Biomarker group BEFREE Adams-Oliver syndrome (AOS; OMIM 100300) typically comprises a combination of congenital scalp defects and terminal transverse limb defects. 24668619 2014
Entrez Id: 100188340
Gene Symbol: AOS
AOS
0.020 GeneticVariation group BEFREE Adams-Oliver syndrome (AOS, OMIM; 100300) is a rare genetic disease characterized by aplasia cutis congenita, terminal transverse limb defects and cutis marmorata with vascular anomalies such as congenital heart defects. 28446798 2017
Entrez Id: 57514
Gene Symbol: ARHGAP31
ARHGAP31
0.010 Biomarker group BEFREE This finding underscores the relevance of sequencing ARHGAP31 in similar cases of isolated limb defects, irrespective of the presence of a complete AOS phenotype. 24668619 2014
Entrez Id: 414
Gene Symbol: ARSD
ARSD
0.010 GeneticVariation group BEFREE Syndromes with particular cardiac anomalies, illustrated by VSD (85%) or ASD (90%), frequently include limb defects. 9545093 1998
Entrez Id: 727857
Gene Symbol: BHLHA9
BHLHA9
0.020 GeneticVariation group BEFREE Recently, the minimal critical region had been reduced, suggesting that BHLHA9 copy number gains are associated with this limb defect. 23790188 2014
Entrez Id: 727857
Gene Symbol: BHLHA9
BHLHA9
0.020 Biomarker group BEFREE We have generated knockout mice in which only the entire coding region of Fingerin was deleted, and indeed found that most null mice display some limb defects. 24852374 2014
Entrez Id: 10263
Gene Symbol: CDK2AP2
CDK2AP2
0.010 Biomarker group BEFREE Duplication of 5p with breakpoints proximal to band p14 is generally associated with distinct craniofacial malformations, cardiac, renal, intestinal, and limb defects, and mental retardation, whereas duplications with breakpoints distal to 5p14 result in a milder phenotype characterized by minor facial anomalies, developmental delay, and seizures. 9741467 1998
Entrez Id: 1029
Gene Symbol: CDKN2A
CDKN2A
0.010 Biomarker group BEFREE Duplication of 5p with breakpoints proximal to band p14 is generally associated with distinct craniofacial malformations, cardiac, renal, intestinal, and limb defects, and mental retardation, whereas duplications with breakpoints distal to 5p14 result in a milder phenotype characterized by minor facial anomalies, developmental delay, and seizures. 9741467 1998
Entrez Id: 55636
Gene Symbol: CHD7
CHD7
0.010 AlteredExpression group BEFREE Given the expression of the CHD7 gene in the developing limb bud, it was anticipated that limb defects would belong to the spectrum of manifestations of CHARGE syndrome. 17937444 2007
Entrez Id: 10970
Gene Symbol: CKAP4
CKAP4
0.030 GeneticVariation group BEFREE Ectrodactyly-Ectodermal dysplasia-Clefting (EEC) syndrome is a rare autosomal dominant disease caused by heterozygous mutations in the p63 gene and characterized by limb defects, orofacial clefting, ectodermal dysplasia, and ocular defects. 26891374 2016
Entrez Id: 10970
Gene Symbol: CKAP4
CKAP4
0.030 GeneticVariation group BEFREE Mutations in the transcription factor p63 have been linked to several syndromes characterized by ectodermal, orofacial, and limb defects. 19793345 2011
Entrez Id: 10970
Gene Symbol: CKAP4
CKAP4
0.030 GeneticVariation group BEFREE The p63 transcription factor, homolog to the p53 tumor suppressor gene, plays a crucial role in epidermal and limb development, as its mutations are associated to human congenital syndromes characterized by skin, craniofacial and limb defects. 25911675 2015
Entrez Id: 1277
Gene Symbol: COL1A1
COL1A1
0.010 GeneticVariation group BEFREE More widespread Dkk1 expression (driven by the Col1A1 3.6 kb promoter) yielded osteopenia with forelimb deformities and hairlessness, while expression restricted to osteoblasts (driven by the Col1A1 2.3 kb promoter) induced severe osteopenia without limb defects or alopecia. 16730481 2006
Entrez Id: 51185
Gene Symbol: CRBN
CRBN
0.010 Biomarker group BEFREE Cereblon loss in zebrafish causes fin defects reminiscent of the limb defects seen in children exposed to thalidomide in utero. 24292623 2014
Entrez Id: 1723
Gene Symbol: DHODH
DHODH
0.010 Biomarker group BEFREE Depending on the type of limb defects, two major groups have been delineated: (1) with predominantly pre-axial anomalies, Nager type AFD, and (2) with predominantly post-axial involvement, Genee-Wiedemann form of AFD, also known as POADS, respectively. 15793832 2005
Entrez Id: 22943
Gene Symbol: DKK1
DKK1
0.010 AlteredExpression group BEFREE More widespread Dkk1 expression (driven by the Col1A1 3.6 kb promoter) yielded osteopenia with forelimb deformities and hairlessness, while expression restricted to osteoblasts (driven by the Col1A1 2.3 kb promoter) induced severe osteopenia without limb defects or alopecia. 16730481 2006
Entrez Id: 1749
Gene Symbol: DLX5
DLX5
0.010 Biomarker group BEFREE While double knockout of Dlx5 and Dlx6 resulted in limb defects in mice, the majority of patients with SHFM1 had only heterozygous chromosomal abnormalities. 25332435 2014
Entrez Id: 1750
Gene Symbol: DLX6
DLX6
0.010 Biomarker group BEFREE While double knockout of Dlx5 and Dlx6 resulted in limb defects in mice, the majority of patients with SHFM1 had only heterozygous chromosomal abnormalities. 25332435 2014
Entrez Id: 1776
Gene Symbol: DNASE1L3
DNASE1L3
0.010 Biomarker group BEFREE There is no reported instance of a malformed child born to a woman who ingested pure LSD; there are six cases of malformation associated with exposure to illicit LSD, four of which have similar limb defects. 4994465 1971
Entrez Id: 9775
Gene Symbol: EIF4A3
EIF4A3
0.010 GeneticVariation group BEFREE A noncoding expansion in EIF4A3 causes Richieri-Costa-Pereira syndrome, a craniofacial disorder associated with limb defects. 24360810 2014
Entrez Id: 2253
Gene Symbol: FGF8
FGF8
0.010 Biomarker group BEFREE Genomic structure, sequence, and mapping of human FGF8 with no evidence for its role in craniosynostosis/limb defect syndromes. 9332670 1997
Entrez Id: 2260
Gene Symbol: FGFR1
FGFR1
0.010 AlteredExpression group BEFREE The early onset of Runx2 expression caused limb defects through the Fgfr1-3 regulation by Runx2. 30202094 2018
Entrez Id: 342184
Gene Symbol: FMN1
FMN1
0.010 GeneticVariation group BEFREE For the first time, chromosomal imbalances in the GREM1 FMN1 region in individuals with limb defects are reported here. 20610440 2010
Entrez Id: 668
Gene Symbol: FOXL2
FOXL2
0.010 Biomarker group BEFREE SOX14 is a candidate gene for limb defects associated with BPES and Möbius syndrome. 10798354 2000
Entrez Id: 2697
Gene Symbol: GJA1
GJA1
0.010 GeneticVariation group BEFREE We compared these findings to the differentiation of osteoblasts isolated from a mouse model of ODDD that harbors a germ line Cx43 mutation and exhibits craniofacial and limb defects mimicking human ODDD. 18269311 2008