Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 8403
Gene Symbol: SOX14
SOX14
0.010 Biomarker group BEFREE SOX14 is a candidate gene for limb defects associated with BPES and Möbius syndrome. 10798354 2000
Entrez Id: 6910
Gene Symbol: TBX5
TBX5
0.060 GeneticVariation group BEFREE TBX5 mutations cause the cardiac and limb defects of the autosomal dominant Holt-Oram syndrome (HOS). 16691575 2006
Entrez Id: 9496
Gene Symbol: TBX4
TBX4
0.010 Biomarker group BEFREE TBX4 was previously suggested as the responsible gene for the heart or limb defects observed in 17q23.2 deletion patients, but the present cases do not have these features despite deletion of this gene. 22052739 2011
Entrez Id: 5879
Gene Symbol: RAC1
RAC1
0.020 Biomarker group BEFREE RAC1 plays an important role in the canonical Wnt pathway and conditional RAC1 knockout mice exhibit truncated-limb defects. 22995989 2013
Entrez Id: 51185
Gene Symbol: CRBN
CRBN
0.010 Biomarker group BEFREE Cereblon loss in zebrafish causes fin defects reminiscent of the limb defects seen in children exposed to thalidomide in utero. 24292623 2014
Entrez Id: 8942
Gene Symbol: KYNU
KYNU
0.010 Biomarker group BEFREE Kynureninase (KYNU) located in 2q22.2, which was associated with tryptophan utilization and metabolic diseases including cardiac, renal and limb defects syndrome 2. 31332944 2019
Entrez Id: 9775
Gene Symbol: EIF4A3
EIF4A3
0.010 GeneticVariation group BEFREE A noncoding expansion in EIF4A3 causes Richieri-Costa-Pereira syndrome, a craniofacial disorder associated with limb defects. 24360810 2014
Entrez Id: 57167
Gene Symbol: SALL4
SALL4
0.020 Biomarker group BEFREE A transcription factor called SALL4 could be the missing link between thalidomide and the limb defects caused by the drug. 30252647 2018
Entrez Id: 100188340
Gene Symbol: AOS
AOS
0.020 Biomarker group BEFREE Adams-Oliver syndrome (AOS; OMIM 100300) typically comprises a combination of congenital scalp defects and terminal transverse limb defects. 24668619 2014
Entrez Id: 100188340
Gene Symbol: AOS
AOS
0.020 GeneticVariation group BEFREE Adams-Oliver syndrome (AOS, OMIM; 100300) is a rare genetic disease characterized by aplasia cutis congenita, terminal transverse limb defects and cutis marmorata with vascular anomalies such as congenital heart defects. 28446798 2017
Entrez Id: 25836
Gene Symbol: NIPBL
NIPBL
0.020 GeneticVariation group BEFREE Additionally, we found that individuals with mutations in NIPBL were most likely to have limb defects compared to mutations in other genes with nonsense, exonic deletion, and frameshift mutations being most prevalent in those with limb defects. 27120260 2016
Entrez Id: 50814
Gene Symbol: NSDHL
NSDHL
0.010 GeneticVariation group BEFREE Although all of the molecularly diagnosed cases with the CHILD phenotype to date have had right-sided disease, we report here a novel nonsense mutation (E151X) of NSDHL in an infant with left-sided CHILD syndrome. 12966526 2003
Entrez Id: 6910
Gene Symbol: TBX5
TBX5
0.060 GeneticVariation group BEFREE Although mutations are found throughout the TBX5 gene, no evidence exists to suggest that genotype affects the location of heart and limb defects or the severity of HOS manifestation. 15096952 2004
Entrez Id: 7066
Gene Symbol: THPO
THPO
0.020 GeneticVariation group BEFREE Association of hereditary thrombocythemia and distal limb defects with a thrombopoietin gene mutation. 19553636 2009
Entrez Id: 6910
Gene Symbol: TBX5
TBX5
0.060 GeneticVariation group BEFREE Autosomal dominant Holt-Oram syndrome (HOS) is caused by mutations in the TBX5 gene and is characterized by congenital heart and preaxial radial ray upper limb defects. 18828908 2008
Entrez Id: 3207
Gene Symbol: HOXA11
HOXA11
0.010 AlteredExpression group BEFREE Because the radius malformations were induced by TM treatment, we concluded the decrease in the Hoxa11 expression was related to the TM-induced limb defects and can be a good marker for early prediction of the teratogenic effect of TM. 24344727 2014
Entrez Id: 83693
Gene Symbol: HSDL1
HSDL1
0.010 GeneticVariation group BEFREE Congenital Hemidysplasia with Ichthyosiform nevus and Limb Defects (CHILD syndrome) is a rare X-linked dominant genodermatosis caused by mutations in the NAD(P) dependent steroid dehydrogenase-like protein gene. 29392821 2018
Entrez Id: 5818
Gene Symbol: NECTIN1
NECTIN1
0.010 Biomarker group BEFREE Defective nectin-1 and -4 have been implicated in ectodermal dysplasia (ED) syndromes with variably associated features including orofacial and limb defects. 24577405 2014
Entrez Id: 1723
Gene Symbol: DHODH
DHODH
0.010 Biomarker group BEFREE Depending on the type of limb defects, two major groups have been delineated: (1) with predominantly pre-axial anomalies, Nager type AFD, and (2) with predominantly post-axial involvement, Genee-Wiedemann form of AFD, also known as POADS, respectively. 15793832 2005
Entrez Id: 10263
Gene Symbol: CDK2AP2
CDK2AP2
0.010 Biomarker group BEFREE Duplication of 5p with breakpoints proximal to band p14 is generally associated with distinct craniofacial malformations, cardiac, renal, intestinal, and limb defects, and mental retardation, whereas duplications with breakpoints distal to 5p14 result in a milder phenotype characterized by minor facial anomalies, developmental delay, and seizures. 9741467 1998
Entrez Id: 28956
Gene Symbol: LAMTOR2
LAMTOR2
0.010 Biomarker group BEFREE Duplication of 5p with breakpoints proximal to band p14 is generally associated with distinct craniofacial malformations, cardiac, renal, intestinal, and limb defects, and mental retardation, whereas duplications with breakpoints distal to 5p14 result in a milder phenotype characterized by minor facial anomalies, developmental delay, and seizures. 9741467 1998
Entrez Id: 6280
Gene Symbol: S100A9
S100A9
0.010 Biomarker group BEFREE Duplication of 5p with breakpoints proximal to band p14 is generally associated with distinct craniofacial malformations, cardiac, renal, intestinal, and limb defects, and mental retardation, whereas duplications with breakpoints distal to 5p14 result in a milder phenotype characterized by minor facial anomalies, developmental delay, and seizures. 9741467 1998
Entrez Id: 1029
Gene Symbol: CDKN2A
CDKN2A
0.010 Biomarker group BEFREE Duplication of 5p with breakpoints proximal to band p14 is generally associated with distinct craniofacial malformations, cardiac, renal, intestinal, and limb defects, and mental retardation, whereas duplications with breakpoints distal to 5p14 result in a milder phenotype characterized by minor facial anomalies, developmental delay, and seizures. 9741467 1998
Entrez Id: 51639
Gene Symbol: SF3B6
SF3B6
0.010 Biomarker group BEFREE Duplication of 5p with breakpoints proximal to band p14 is generally associated with distinct craniofacial malformations, cardiac, renal, intestinal, and limb defects, and mental retardation, whereas duplications with breakpoints distal to 5p14 result in a milder phenotype characterized by minor facial anomalies, developmental delay, and seizures. 9741467 1998
Entrez Id: 11102
Gene Symbol: RPP14
RPP14
0.010 Biomarker group BEFREE Duplication of 5p with breakpoints proximal to band p14 is generally associated with distinct craniofacial malformations, cardiac, renal, intestinal, and limb defects, and mental retardation, whereas duplications with breakpoints distal to 5p14 result in a milder phenotype characterized by minor facial anomalies, developmental delay, and seizures. 9741467 1998