Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 8942
Gene Symbol: KYNU
KYNU
0.010 Biomarker group BEFREE Kynureninase (KYNU) located in 2q22.2, which was associated with tryptophan utilization and metabolic diseases including cardiac, renal and limb defects syndrome 2. 31332944 2019
Entrez Id: 100507392
Gene Symbol: SENCR
SENCR
0.010 Biomarker group BEFREE Moreover, it raises the possibility that SENCR, a long noncoding RNA, could be responsible for limb defects, because of its early role in endothelial cell commitment and function. 30888095 2019
Entrez Id: 860
Gene Symbol: RUNX2
RUNX2
0.010 AlteredExpression group BEFREE The early onset of Runx2 expression caused limb defects through the Fgfr1-3 regulation by Runx2. 30202094 2018
Entrez Id: 2260
Gene Symbol: FGFR1
FGFR1
0.010 AlteredExpression group BEFREE The early onset of Runx2 expression caused limb defects through the Fgfr1-3 regulation by Runx2. 30202094 2018
Entrez Id: 83693
Gene Symbol: HSDL1
HSDL1
0.010 GeneticVariation group BEFREE Congenital Hemidysplasia with Ichthyosiform nevus and Limb Defects (CHILD syndrome) is a rare X-linked dominant genodermatosis caused by mutations in the NAD(P) dependent steroid dehydrogenase-like protein gene. 29392821 2018
Entrez Id: 7476
Gene Symbol: WNT7A
WNT7A
0.010 GeneticVariation group BEFREE Variants in WNT7A are known to cause at least two other limb defect disorders, the syndromes of Fuhrmann and Al-Awadi/Raas-Rothschild. 28855715 2017
Entrez Id: 5125
Gene Symbol: PCSK5
PCSK5
0.010 GeneticVariation group BEFREE Loss of proprotein convertase subtilisin/kexin type 5 (Pcsk5) results in multiple developmental anomalies including cardiac malformations, caudal regression, pre-sacral mass, renal agenesis, anteroposterior patterning defects, and tracheo-oesophageal and anorectal malformations, and is a model for VACTERL/caudal regression/Currarino syndromes (VACTERL association - Vertebral anomalies, Anal atresia, Cardiac defects, Tracheoesophageal fistula and/or Esophageal atresia, Renal & Radial anomalies and Limb defects). 28446132 2017
Entrez Id: 2736
Gene Symbol: GLI2
GLI2
0.010 Biomarker group BEFREE Genetic vulnerabilities to prenatal alcohol exposure: Limb defects in sonic hedgehog and GLI2 heterozygous mice. 28504423 2017
Entrez Id: 51776
Gene Symbol: MAP3K20
MAP3K20
0.010 GeneticVariation group BEFREE Exome sequencing and CRISPR/Cas genome editing identify mutations of ZAK as a cause of limb defects in humans and mice. 26755636 2016
Entrez Id: 7157
Gene Symbol: TP53
TP53
0.010 GeneticVariation group BEFREE The p63 transcription factor, homolog to the p53 tumor suppressor gene, plays a crucial role in epidermal and limb development, as its mutations are associated to human congenital syndromes characterized by skin, craniofacial and limb defects. 25911675 2015
Entrez Id: 10907
Gene Symbol: TXNL4A
TXNL4A
0.010 AlteredExpression group BEFREE Mutations in several other genes involved in spliceosomal function or linked aspects of mRNA processing have also recently been identified in human disorders with specific craniofacial malformations: SF3B4 in Nager syndrome, an acrofacial dysostosis (AFD); SNRPB in cerebrocostomandibular syndrome, characterized by Robin sequence and rib defects; EIF4A3 in the AFD Richieri-Costa-Pereira syndrome, characterized by Robin sequence, median mandibular cleft and limb defects; and TXNL4A in Burn-McKeown syndrome, involving specific craniofacial dysmorphisms. 25865758 2015
Entrez Id: 7979
Gene Symbol: SEM1
SEM1
0.010 Biomarker group BEFREE While double knockout of Dlx5 and Dlx6 resulted in limb defects in mice, the majority of patients with SHFM1 had only heterozygous chromosomal abnormalities. 25332435 2014
Entrez Id: 1749
Gene Symbol: DLX5
DLX5
0.010 Biomarker group BEFREE While double knockout of Dlx5 and Dlx6 resulted in limb defects in mice, the majority of patients with SHFM1 had only heterozygous chromosomal abnormalities. 25332435 2014
Entrez Id: 5818
Gene Symbol: NECTIN1
NECTIN1
0.010 Biomarker group BEFREE Defective nectin-1 and -4 have been implicated in ectodermal dysplasia (ED) syndromes with variably associated features including orofacial and limb defects. 24577405 2014
Entrez Id: 9775
Gene Symbol: EIF4A3
EIF4A3
0.010 GeneticVariation group BEFREE A noncoding expansion in EIF4A3 causes Richieri-Costa-Pereira syndrome, a craniofacial disorder associated with limb defects. 24360810 2014
Entrez Id: 57514
Gene Symbol: ARHGAP31
ARHGAP31
0.010 Biomarker group BEFREE This finding underscores the relevance of sequencing ARHGAP31 in similar cases of isolated limb defects, irrespective of the presence of a complete AOS phenotype. 24668619 2014
Entrez Id: 4851
Gene Symbol: NOTCH1
NOTCH1
0.010 GeneticVariation group BEFREE Here, we report five heterozygous NOTCH1 variants in unrelated individuals with Adams-Oliver syndrome (AOS), a rare disease with major features of aplasia cutis of the scalp and terminal transverse limb defects. 25132448 2014
Entrez Id: 3207
Gene Symbol: HOXA11
HOXA11
0.010 AlteredExpression group BEFREE Because the radius malformations were induced by TM treatment, we concluded the decrease in the Hoxa11 expression was related to the TM-induced limb defects and can be a good marker for early prediction of the teratogenic effect of TM. 24344727 2014
Entrez Id: 1750
Gene Symbol: DLX6
DLX6
0.010 Biomarker group BEFREE While double knockout of Dlx5 and Dlx6 resulted in limb defects in mice, the majority of patients with SHFM1 had only heterozygous chromosomal abnormalities. 25332435 2014
Entrez Id: 51185
Gene Symbol: CRBN
CRBN
0.010 Biomarker group BEFREE Cereblon loss in zebrafish causes fin defects reminiscent of the limb defects seen in children exposed to thalidomide in utero. 24292623 2014
Entrez Id: 3664
Gene Symbol: IRF6
IRF6
0.010 GeneticVariation group BEFREE We identified an association between mutations in the DNA-binding domain of IRF6 and limb defects (including pterygia). 23949966 2013
Entrez Id: 7021
Gene Symbol: TFAP2B
TFAP2B
0.010 AlteredExpression group BEFREE Loss of Tfap2b results in altered Bmp expression that may cause the heart-limb defects observed in Tfap2b mouse mutants and Char syndrome patients. 21829553 2011
Entrez Id: 9496
Gene Symbol: TBX4
TBX4
0.010 Biomarker group BEFREE TBX4 was previously suggested as the responsible gene for the heart or limb defects observed in 17q23.2 deletion patients, but the present cases do not have these features despite deletion of this gene. 22052739 2011
Entrez Id: 342184
Gene Symbol: FMN1
FMN1
0.010 GeneticVariation group BEFREE For the first time, chromosomal imbalances in the GREM1 FMN1 region in individuals with limb defects are reported here. 20610440 2010
Entrez Id: 6926
Gene Symbol: TBX3
TBX3
0.010 GeneticVariation group BEFREE Novel TBX3 mutation data in families with ulnar-mammary syndrome indicate a genotype-phenotype relationship: mutations that do not disrupt the T-domain are associated with less severe limb defects. 16530712 2009