Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 3117
Gene Symbol: HLA-DQA1
HLA-DQA1
0.020 Biomarker disease BEFREE The extended haplotypes HLA-A25-B13-Cw*0602, HLA-A25-B27-Cw*0602, HLA-DQA1*0302-DQB1*0303-Cw*0602 and HLA-B13-DQB1*0303-Cw*0602 were found to be associated with all types of vitiligo in Chinese Hans, whereas the frequency of HLA-A25-Cw*0602-DQA1*0302 was significantly increased in generalized vitiligo but not in localized vitiligo. 16922942 2006
Entrez Id: 3117
Gene Symbol: HLA-DQA1
HLA-DQA1
0.020 Biomarker disease BEFREE The frequency of HLA-DQB1*0303 (OR = 3.72, P(c) < 0.001) allele was significantly increased in localized vitiligo patients vs. controls, whereas HLA-DQA1*0302 (OR = 2.47, P(c) < 0.01), -DQB1*0303 (OR = 2.67, P(c) < 0.01), and -DQB1*0503 (OR = 4.46, P(c) < 0.01) allele frequencies were significantly increased and -DQA1*0501 (OR = 0.27, P(c) < 0.01) allele frequency was highly decreased in generalized vitiligo patients. 16409268 2005
Entrez Id: 23765
Gene Symbol: IL17RA
IL17RA
0.010 Biomarker disease BEFREE Positive correlation of IL-17 (R = .238) with body surface area (BSA) was observed in patients with generalized vitiligo. 29504235 2019
Entrez Id: 5743
Gene Symbol: PTGS2
PTGS2
0.010 GeneticVariation disease BEFREE Frequency of COX2-1195 AA, AG, GG genotypes showed no significant association among patients with vitiligo (P = 0.626, 0.321, 0.08, respectively); those with generalized vitiligo (P = 0.739, 0.291, 0.101, respectively) and those with segmental vitiligo (P = 0.410, 1.00, 0.676, respectively) compared to the control group. 29094684 2019
Entrez Id: 3558
Gene Symbol: IL2
IL2
0.010 Biomarker disease BEFREE IL-2 was significantly raised (P = .028) in localized vitiligo, whereas IL-17 and IL-22 were significantly raised in generalized vitiligo (P = .00 and P = .019, respectively). 29504235 2019
Entrez Id: 3605
Gene Symbol: IL17A
IL17A
0.010 Biomarker disease BEFREE IL-2 was significantly raised (P = .028) in localized vitiligo, whereas IL-17 and IL-22 were significantly raised in generalized vitiligo (P = .00 and P = .019, respectively). 29504235 2019
Entrez Id: 50616
Gene Symbol: IL22
IL22
0.010 AlteredExpression disease BEFREE IL-2 was significantly raised (P = .028) in localized vitiligo, whereas IL-17 and IL-22 were significantly raised in generalized vitiligo (P = .00 and P = .019, respectively). 29504235 2019
Entrez Id: 3569
Gene Symbol: IL6
IL6
0.010 Biomarker disease BEFREE To assess the serum levels of cytokines secreted by Th1 (IL-2, TNF-α), Th2 (IL-6), and Th17 cells (IL-17, IL-22) in patients with localized vitiligo and generalized vitiligo and to correlate their levels with the extent, duration, and activity of disease. 29504235 2019
Entrez Id: 2952
Gene Symbol: GSTT1
GSTT1
0.010 Biomarker disease BEFREE Individuals with GSTM1 null/GSTT1+ heterozygosis have a 2.97 odds protection from having generalized vitiligo compared with patients. 29641697 2018
Entrez Id: 2944
Gene Symbol: GSTM1
GSTM1
0.010 GeneticVariation disease BEFREE This study showed a significant trend towards an association with the combination of the GSTM1/GSTT1 double null polymorphism and generalized vitiligo. 29641697 2018
Entrez Id: 1401
Gene Symbol: CRP
CRP
0.010 AlteredExpression disease BEFREE Neutrophil to lymphocyte ratio and serum CRP levels were significantly higher in patients who have generalized vitiligo than those with localized vitiligo and healthy controls. 29515336 2017
Entrez Id: 3119
Gene Symbol: HLA-DQB1
HLA-DQB1
0.010 GeneticVariation disease BEFREE The alleles HLA-A*32 (P = 0.0156, Pc = 0.3120, OR = 22.43, 95% CI = 1.12-449.46) and HLA-DQB1*06 (P = 0.0207, Pc = 0.1035, OR = 0.28, 95% CI = 0.10-0.81) were associated with both localized and generalized vitiligo. 26769539 2016
Entrez Id: 3105
Gene Symbol: HLA-A
HLA-A
0.010 GeneticVariation disease BEFREE The alleles HLA-A*32 (P = 0.0156, Pc = 0.3120, OR = 22.43, 95% CI = 1.12-449.46) and HLA-DQB1*06 (P = 0.0207, Pc = 0.1035, OR = 0.28, 95% CI = 0.10-0.81) were associated with both localized and generalized vitiligo. 26769539 2016
Entrez Id: 3965
Gene Symbol: LGALS9
LGALS9
0.010 Biomarker disease BEFREE Participation of T cell immunoglobulin and mucin domain-3 (TIM-3) and its ligand (galectin-9) in the pathogenesis of active generalized vitiligo. 25784621 2015
Entrez Id: 84868
Gene Symbol: HAVCR2
HAVCR2
0.010 Biomarker disease BEFREE Participation of T cell immunoglobulin and mucin domain-3 (TIM-3) and its ligand (galectin-9) in the pathogenesis of active generalized vitiligo. 25784621 2015
Entrez Id: 3458
Gene Symbol: IFNG
IFNG
0.010 AlteredExpression disease BEFREE Moreover, the increased IFN-γ levels in patients lead to increased ICAM1 expression, which could be a probable link between cytokines and T-cell involvement in pathogenesis of GV. 23777204 2013
Entrez Id: 60314
Gene Symbol: C12orf10
C12orf10
0.010 AlteredExpression disease BEFREE The MYG1 mRNA expression was increased in patients with active and generalized vitiligo as compared to stable and localized vitiligo. 23706493 2013
Entrez Id: 3383
Gene Symbol: ICAM1
ICAM1
0.010 AlteredExpression disease BEFREE Moreover, the increased IFN-γ levels in patients lead to increased ICAM1 expression, which could be a probable link between cytokines and T-cell involvement in pathogenesis of GV. 23777204 2013
Entrez Id: 25797
Gene Symbol: QPCT
QPCT
0.010 Biomarker disease BEFREE The frequency of susceptible haplotype 'GCT' was significantly higher in patients with GV and increased the risk of vitiligo twofold. 23773036 2013
Entrez Id: 56244
Gene Symbol: BTNL2
BTNL2
0.010 GeneticVariation disease BEFREE We identified a quantitative trait locus for vitiligo age of onset in the major histocompatibility complex (MHC) class II region, located near c6orf10-BTNL2 (rs7758128; P=8.14 × 10(-11)), a region that is also associated with generalized vitiligo susceptibility. 21326295 2011
Entrez Id: 7054
Gene Symbol: TH
TH
0.010 Biomarker disease BEFREE Autoantibodies against tyrosine hydroxylase in patients with non-segmental (generalised) vitiligo. 21158937 2011
Entrez Id: 10665
Gene Symbol: TSBP1
TSBP1
0.010 GeneticVariation disease BEFREE We identified a quantitative trait locus for vitiligo age of onset in the major histocompatibility complex (MHC) class II region, located near c6orf10-BTNL2 (rs7758128; P=8.14 × 10(-11)), a region that is also associated with generalized vitiligo susceptibility. 21326295 2011
Entrez Id: 3002
Gene Symbol: GZMB
GZMB
0.010 Biomarker disease BEFREE We also detected associations between generalized vitiligo and SNPs in two additional immune-related loci, RERE (P=7.07x10(-15)) and GZMB (P=3.44x10(-8)), and in a locus containing TYR (P=1.60x10(-18)), encoding tyrosinase. 20410501 2010
Entrez Id: 473
Gene Symbol: RERE
RERE
0.010 Biomarker disease BEFREE We also detected associations between generalized vitiligo and SNPs in two additional immune-related loci, RERE (P=7.07x10(-15)) and GZMB (P=3.44x10(-8)), and in a locus containing TYR (P=1.60x10(-18)), encoding tyrosinase. 20410501 2010
Entrez Id: 27022
Gene Symbol: FOXD3
FOXD3
0.010 GeneticVariation disease BEFREE We previously reported the linkage signals on chromosomes 1, 7, and 17 in Caucasian families with generalized vitiligo and associated autoimmune diseases and identified the risk loci of chromosomes 17 and 1 as NLRP1 (NALP1) and FOXD3, respectively. 19727120 2010