DisGeNET - a database of gene-disease associations

List of shared variants

Juvenile arthritis, C3495559

Disease: Celiac Disease

Source: ALL

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Gene

Disease

Variant

Source

DSI _v

DPI _v

pLI

Consequence

AF_EXOME

AF_GENOME

Variant	Gene	DSI _v	DPI _v	Chr	Position	Consequence	Alleles	Class	AF EXOME	AF GENOME	Num. diseases
rs1217691063	MTHFR	0.330	0.920	1	11796309	missense variant	A/G	snv	4.0E-06	7.0E-06	614
rs4986790	TLR4	0.438	0.800	9	117713024	missense variant	A/G;T	snv	6.1E-02; 4.0E-06		223
rs4986791	TLR4	0.456	0.840	9	117713324	missense variant	C/T	snv	5.7E-02	4.9E-02	182
rs2476601	AP4B1-AS1 ; PTPN22	0.498	0.800	1	113834946	missense variant	A/G	snv	0.93	0.93	121
rs231775	CTLA4	0.504	0.720	2	203867991	missense variant	A/G;T	snv	0.42; 4.0E-06		115
rs11209026	IL23R	0.597	0.680	1	67240275	missense variant	G/A	snv	4.2E-02	4.6E-02	46
rs3743930	MEFV	0.611	0.720	16	3254626	missense variant	C/G;T	snv	7.1E-02		43
rs6679677	PHTF1	0.653	0.320	1	113761186	upstream gene variant	C/A	snv		6.7E-02	26
rs653178	ATXN2	0.672	0.600	12	111569952	intron variant	C/T	snv		0.67	41
rs35829419	NLRP3	0.689	0.560	1	247425556	missense variant	C/A	snv	3.9E-02	3.3E-02	23
rs763361	CD226	0.689	0.520	18	69864406	missense variant	T/A;C	snv	4.0E-06; 0.52		21
rs706778	IL2RA	0.695	0.320	10	6056986	intron variant	C/T	snv		0.46	19
rs12232497		0.701	0.360	17	39883866	intergenic variant	T/C	snv		0.35	18
rs35761398	CNR2	0.701	0.520	1	23875429	missense variant	TT/CC	mnv			19
rs2501432	CNR2	0.716	0.480	1	23875430	missense variant	T/C;G	snv	0.62		16
rs36051895		0.716	0.240	9	4981866	upstream gene variant	G/T	snv		0.25	15
rs4246905	TNFSF15	0.716	0.400	9	114790969	missense variant	T/A;C	snv	0.76		16
rs4625	DAG1	0.716	0.280	3	49534707	3 prime UTR variant	A/G	snv		0.30	17
rs4676410	GPR35	0.716	0.240	2	240624322	intron variant	G/A	snv		0.26	17
rs602662	LOC105447645 ; FUT2	0.716	0.280	19	48703728	missense variant	G/A	snv	0.40	0.47	16
rs7725052		0.716	0.240	5	40487168	intron variant	C/T	snv		0.52	16
rs7731626	ANKRD55	0.716	0.240	5	56148856	intron variant	G/A	snv		0.30	16
rs10822050		0.724	0.240	10	62679011	downstream gene variant	T/C	snv		0.33	14
rs10988542	FNBP1	0.724	0.240	9	129894985	intron variant	G/A;C	snv			14
rs11145763	CARD9	0.724	0.240	9	136369144	intron variant	A/C;G;T	snv			14