Disease: Celiac Disease
Source: ALL
Variant Gene DSI v DPI v Chr Position Consequence Alleles Class AF EXOME AF GENOME Num. diseases
rs11145763
CARD9
0.724 0.240 9 136369144 intron variant A/C;G;T snv 14
rs1217691063
MTHFR
0.330 0.920 1 11796309 missense variant A/G snv 4.0E-06 7.0E-06 614
rs12598357 0.724 0.240 16 28329624 intergenic variant A/G snv 0.43 15
rs17466626
LOC105369736 ; LRRK2
0.724 0.240 12 40366829 non coding transcript exon variant A/G snv 1.7E-02 14
rs2476601
AP4B1-AS1 ; PTPN22
0.498 0.800 1 113834946 missense variant A/G snv 0.93 0.93 121
rs4625
DAG1
0.716 0.280 3 49534707 3 prime UTR variant A/G snv 0.30 17
rs72743477
SMAD3
0.724 0.240 15 67171953 intron variant A/G snv 0.17 14
rs231775
CTLA4
0.504 0.720 2 203867991 missense variant A/G;T snv 0.42; 4.0E-06 115
rs4986790
TLR4
0.438 0.800 9 117713024 missense variant A/G;T snv 6.1E-02; 4.0E-06 223
rs2807264 0.724 0.240 X 136583619 downstream gene variant C/A snv 14
rs35829419
NLRP3
0.689 0.560 1 247425556 missense variant C/A snv 3.9E-02 3.3E-02 23
rs6679677
PHTF1
0.653 0.320 1 113761186 upstream gene variant C/A snv 6.7E-02 26
rs11580078
C1orf141 ; IL23R
0.724 0.240 1 67203951 intron variant C/A;G snv 14
rs62324212
IL21-AS1
0.724 0.240 4 122639784 intron variant C/A;G snv 15
rs1464510
LPP
0.807 0.280 3 188394766 intron variant C/A;T snv 9
rs1980422 0.776 0.320 2 203745673 intergenic variant C/A;T snv 9
rs3743930
MEFV
0.611 0.720 16 3254626 missense variant C/G;T snv 7.1E-02 43
rs12863738 0.724 0.240 X 136949968 intron variant C/T snv 0.16 14
rs17885785
IGF2 ; IGF2-AS ; INS-IGF2
0.724 0.240 11 2146620 non coding transcript exon variant C/T snv 0.14 14
rs2066363
ADGRL2
0.724 0.240 1 81771892 intron variant C/T snv 0.71 14
rs34884278 0.724 0.240 1 172869708 intron variant C/T snv 0.63 14
rs36001488
ATG16L1
0.724 0.240 2 233276621 intron variant C/T snv 0.44 14
rs4986791
TLR4
0.456 0.840 9 117713324 missense variant C/T snv 5.7E-02 4.9E-02 182
rs62131887 0.724 0.240 19 10476920 intergenic variant C/T snv 0.37 14
rs653178
ATXN2
0.672 0.600 12 111569952 intron variant C/T snv 0.67 41