Gene Disease Score gda Association Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 3119
Gene Symbol: HLA-DQB1
HLA-DQB1
CUI: C0153382
Disease: Malignant neoplasm of oropharynx
Malignant neoplasm of oropharynx
0.110 GeneticVariation BEFREE Oropharyngeal cancer associations were limited to the human leukocyte antigen (HLA) region, and classical HLA allele imputation showed a protective association with the class II haplotype HLA-DRB1*1301-HLA-DQA1*0103-HLA-DQB1*0603 (odds ratio (OR) = 0.59, P = 2.7 × 10<sup>-9</sup>). 27749845

2016

Entrez Id: 125
Gene Symbol: ADH1B
ADH1B
CUI: C0153382
Disease: Malignant neoplasm of oropharynx
Malignant neoplasm of oropharynx
0.110 GeneticVariation GWASCAT Genome-wide association analyses identify new susceptibility loci for oral cavity and pharyngeal cancer. 27749845

2016

Entrez Id: 3119
Gene Symbol: HLA-DQB1
HLA-DQB1
CUI: C0153382
Disease: Malignant neoplasm of oropharynx
Malignant neoplasm of oropharynx
0.110 GeneticVariation GWASCAT Genome-wide association analyses identify new susceptibility loci for oral cavity and pharyngeal cancer. 27749845

2016

Entrez Id: 7157
Gene Symbol: TP53
TP53
CUI: C0153382
Disease: Malignant neoplasm of oropharynx
Malignant neoplasm of oropharynx
0.100 GeneticVariation BEFREE The findings suggest that MDM2 SNP309, A2164G, and p53 codon 72 SNPs may collectively contribute to non-oropharyngeal cancer risk and that MDM2 SNP309 individually or in combination with p53 codon 72 may accelerate the development of non-oropharyngeal cancer in women. 21656578

2011

Entrez Id: 1029
Gene Symbol: CDKN2A
CDKN2A
CUI: C0153382
Disease: Malignant neoplasm of oropharynx
Malignant neoplasm of oropharynx
0.100 GeneticVariation BEFREE Recently, the eighth edition of the American Joint Committee on Cancer/Union for International Cancer Control (AJCC/UICC) tumor-node-metastasis (TNM) staging system for OPC (based on the p16INK4a (p16) status) was proposed and has been implemented. 30987261

2019

Entrez Id: 7157
Gene Symbol: TP53
TP53
CUI: C0153382
Disease: Malignant neoplasm of oropharynx
Malignant neoplasm of oropharynx
0.100 GeneticVariation BEFREE Patients with p53 mutant OSCC had significantly worse overall survival (p=0.01). 26952933

2016

Entrez Id: 1029
Gene Symbol: CDKN2A
CDKN2A
CUI: C0153382
Disease: Malignant neoplasm of oropharynx
Malignant neoplasm of oropharynx
0.100 GeneticVariation BEFREE Patients with OPC with available p16 status and tobacco history were eligible. 30913305

2019

Entrez Id: 1029
Gene Symbol: CDKN2A
CDKN2A
CUI: C0153382
Disease: Malignant neoplasm of oropharynx
Malignant neoplasm of oropharynx
0.100 GeneticVariation BEFREE Overall, this study provides evidence of epigenetic changes to the downstream region of the CDKN2A locus in HPV+ oropharyngeal cancer that are associated with changes in expression of the coded protein products. 25619363

2015

Entrez Id: 115482713
Gene Symbol: H3P10
H3P10
CUI: C0153382
Disease: Malignant neoplasm of oropharynx
Malignant neoplasm of oropharynx
0.100 GeneticVariation BEFREE Patients with OPC with available p16 status and tobacco history were eligible. 30913305

2019

Entrez Id: 7157
Gene Symbol: TP53
TP53
CUI: C0153382
Disease: Malignant neoplasm of oropharynx
Malignant neoplasm of oropharynx
0.100 GeneticVariation BEFREE Human papillomavirus tumor-infiltrating T-regulatory lymphocytes and P53 codon 72 polymorphisms correlate with clinical staging and prognosis of oropharyngeal cancer. 23686119

2013

Entrez Id: 7157
Gene Symbol: TP53
TP53
CUI: C0153382
Disease: Malignant neoplasm of oropharynx
Malignant neoplasm of oropharynx
0.100 GeneticVariation BEFREE The results from this study showed both p53 variant genotypes (Arg/Pro+Pro/Pro) and p73 variant genotypes (GC/AT+AT/AT) were significantly associated with HPV16-positive tumor in oropharyngeal cancer patients (OR, 1.9, 95% CI, 1.1-3.3 and OR, 2.1, 95% CI, 1.2-3.8, respectively), while the combined variant genotypes (p53 Pro carriers and p73 AT carriers) exhibited a significantly greater association with HPV16-positive tumor (OR, 3.2, 95% CI, 1.4-7.4), compared with combined wild-type genotypes (p53 Arg/Arg and p73 GC/GC), and the association was in a statistically significant dose-effect relationship (p = 0.001). 22523600

2012

Entrez Id: 3749
Gene Symbol: KCNC4
KCNC4
CUI: C0153382
Disease: Malignant neoplasm of oropharynx
Malignant neoplasm of oropharynx
0.100 GeneticVariation GWASCAT Genome-wide association analyses identify new susceptibility loci for oral cavity and pharyngeal cancer. 27749845

2016

Entrez Id: 23001
Gene Symbol: WDFY3
WDFY3
CUI: C0153382
Disease: Malignant neoplasm of oropharynx
Malignant neoplasm of oropharynx
0.100 GeneticVariation GWASCAT Genome-wide association analyses identify new susceptibility loci for oral cavity and pharyngeal cancer. 27749845

2016

Entrez Id: 1029
Gene Symbol: CDKN2A
CDKN2A
CUI: C0153382
Disease: Malignant neoplasm of oropharynx
Malignant neoplasm of oropharynx
0.100 GeneticVariation BEFREE Potentially functional variants of p14ARF are associated with HPV-positive oropharyngeal cancer patients and survival after definitive chemoradiotherapy. 24104554

2014

Entrez Id: 23583
Gene Symbol: SMUG1
SMUG1
CUI: C0153382
Disease: Malignant neoplasm of oropharynx
Malignant neoplasm of oropharynx
0.050 GeneticVariation BEFREE Predictive modeling of outcomes following definitive chemoradiotherapy for oropharyngeal cancer based on FDG-PET image characteristics. 28604368

2017

Entrez Id: 406906
Gene Symbol: MIR122
MIR122
CUI: C0153382
Disease: Malignant neoplasm of oropharynx
Malignant neoplasm of oropharynx
0.030 GeneticVariation BEFREE A functional variant at miRNA-122 binding site in IL-1a 3' UTR predicts risk of recurrence in patients with oropharyngeal cancer. 27121322

2016

Entrez Id: 3552
Gene Symbol: IL1A
IL1A
CUI: C0153382
Disease: Malignant neoplasm of oropharynx
Malignant neoplasm of oropharynx
0.030 GeneticVariation BEFREE A functional variant at miRNA-122 binding site in IL-1a 3' UTR predicts risk of recurrence in patients with oropharyngeal cancer. 27121322

2016

Entrez Id: 3552
Gene Symbol: IL1A
IL1A
CUI: C0153382
Disease: Malignant neoplasm of oropharynx
Malignant neoplasm of oropharynx
0.030 GeneticVariation BEFREE A functional variant at miRNA-122 binding site in IL-1α 3' UTR predicts risk and HPV-positive tumours of oropharyngeal cancer. 25981582

2015

Entrez Id: 406906
Gene Symbol: MIR122
MIR122
CUI: C0153382
Disease: Malignant neoplasm of oropharynx
Malignant neoplasm of oropharynx
0.030 GeneticVariation BEFREE A functional variant at miRNA-122 binding site in IL-1α 3' UTR predicts risk and HPV-positive tumours of oropharyngeal cancer. 25981582

2015

Entrez Id: 7161
Gene Symbol: TP73
TP73
CUI: C0153382
Disease: Malignant neoplasm of oropharynx
Malignant neoplasm of oropharynx
0.020 GeneticVariation BEFREE The results from this study showed both p53 variant genotypes (Arg/Pro+Pro/Pro) and p73 variant genotypes (GC/AT+AT/AT) were significantly associated with HPV16-positive tumor in oropharyngeal cancer patients (OR, 1.9, 95% CI, 1.1-3.3 and OR, 2.1, 95% CI, 1.2-3.8, respectively), while the combined variant genotypes (p53 Pro carriers and p73 AT carriers) exhibited a significantly greater association with HPV16-positive tumor (OR, 3.2, 95% CI, 1.4-7.4), compared with combined wild-type genotypes (p53 Arg/Arg and p73 GC/GC), and the association was in a statistically significant dose-effect relationship (p = 0.001). 22523600

2012

Entrez Id: 5290
Gene Symbol: PIK3CA
PIK3CA
CUI: C0153382
Disease: Malignant neoplasm of oropharynx
Malignant neoplasm of oropharynx
0.020 GeneticVariation BEFREE Reverse-phase protein array profiling of oropharyngeal cancer and significance of PIK3CA mutations in HPV-associated head and neck cancer. 24599934

2014

Entrez Id: 83478
Gene Symbol: ARHGAP24
ARHGAP24
CUI: C0153382
Disease: Malignant neoplasm of oropharynx
Malignant neoplasm of oropharynx
0.020 GeneticVariation BEFREE The results from this study showed both p53 variant genotypes (Arg/Pro+Pro/Pro) and p73 variant genotypes (GC/AT+AT/AT) were significantly associated with HPV16-positive tumor in oropharyngeal cancer patients (OR, 1.9, 95% CI, 1.1-3.3 and OR, 2.1, 95% CI, 1.2-3.8, respectively), while the combined variant genotypes (p53 Pro carriers and p73 AT carriers) exhibited a significantly greater association with HPV16-positive tumor (OR, 3.2, 95% CI, 1.4-7.4), compared with combined wild-type genotypes (p53 Arg/Arg and p73 GC/GC), and the association was in a statistically significant dose-effect relationship (p = 0.001). 22523600

2012

Entrez Id: 83478
Gene Symbol: ARHGAP24
ARHGAP24
CUI: C0153382
Disease: Malignant neoplasm of oropharynx
Malignant neoplasm of oropharynx
0.020 GeneticVariation BEFREE The p73 polymorphism was associated with HPV-16 status in SCCHN and may serve as a marker of positive HPV-16 tumor status in patients with SCCHN, particularly those with oropharyngeal cancer. 19197996

2009

Entrez Id: 7161
Gene Symbol: TP73
TP73
CUI: C0153382
Disease: Malignant neoplasm of oropharynx
Malignant neoplasm of oropharynx
0.020 GeneticVariation BEFREE The p73 polymorphism was associated with HPV-16 status in SCCHN and may serve as a marker of positive HPV-16 tumor status in patients with SCCHN, particularly those with oropharyngeal cancer. 19197996

2009

Entrez Id: 3123
Gene Symbol: HLA-DRB1
HLA-DRB1
CUI: C0153382
Disease: Malignant neoplasm of oropharynx
Malignant neoplasm of oropharynx
0.020 GeneticVariation BEFREE Oropharyngeal cancer associations were limited to the human leukocyte antigen (HLA) region, and classical HLA allele imputation showed a protective association with the class II haplotype HLA-DRB1*1301-HLA-DQA1*0103-HLA-DQB1*0603 (odds ratio (OR) = 0.59, P = 2.7 × 10<sup>-9</sup>). 27749845

2016