Gene Disease Score gda Association Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 23136
Gene Symbol: EPB41L3
EPB41L3
CUI: C0153382
Disease: Malignant neoplasm of oropharynx
Malignant neoplasm of oropharynx
0.010 GeneticVariation BEFREE When HPV 16 genes and EPB41L3 methylation status were combined in a logistic regression analysis, a sensitivity of 70.3% and a specificity of 90.9% were observed for the detection of OPC from an oral gargle. 31304592

2020

Entrez Id: 7076
Gene Symbol: TIMP1
TIMP1
CUI: C0153382
Disease: Malignant neoplasm of oropharynx
Malignant neoplasm of oropharynx
0.010 Biomarker BEFREE High levels of tissue inhibitor of metalloproteinase-1 (TIMP-1) in the serum are associated with poor prognosis in HPV-negative squamous cell oropharyngeal cancer. 31240326

2019

Entrez Id: 3553
Gene Symbol: IL1B
IL1B
CUI: C0153382
Disease: Malignant neoplasm of oropharynx
Malignant neoplasm of oropharynx
0.010 Biomarker BEFREE The IL-1/IL-1R axis induces greater fibroblast-derived chemokine release in human papillomavirus-negative compared to positive oropharyngeal cancer. 30191960

2019

Entrez Id: 51586
Gene Symbol: MED15
MED15
CUI: C0153382
Disease: Malignant neoplasm of oropharynx
Malignant neoplasm of oropharynx
0.010 Biomarker BEFREE Also, this quadruple-methylation marker panel of <i>p16</i><sup>INK4a</sup>, <i>RASSF1A</i>, <i>TIMP3</i>, and <i>PCQAP/MED15</i> TSGs demonstrated excellent diagnostic accuracy in the early detection of OC at 91.7% sensitivity and 92.3% specificity and of OPC at 99.8% sensitivity and 92.1% specificity from healthy controls. 31013839

2019

Entrez Id: 836
Gene Symbol: CASP3
CASP3
CUI: C0153382
Disease: Malignant neoplasm of oropharynx
Malignant neoplasm of oropharynx
0.010 GeneticVariation BEFREE CASP8 (rs3834129) and CASP3 (rs4647601) polymorphisms in oropharynx cancer risk, tumor cell differentiation, and prognosis in a cohort of the Brazilian population. 31587185

2019

Entrez Id: 200315
Gene Symbol: APOBEC3A
APOBEC3A
CUI: C0153382
Disease: Malignant neoplasm of oropharynx
Malignant neoplasm of oropharynx
0.010 Biomarker BEFREE These findings suggest that A3A is associated with a good prognosis in ERα-positive OPC, and indicate the prognostic significance of ERα in HPV-positive OPC. 31228270

2019

Entrez Id: 100913187
Gene Symbol: APOBEC3A_B
APOBEC3A_B
CUI: C0153382
Disease: Malignant neoplasm of oropharynx
Malignant neoplasm of oropharynx
0.010 Biomarker BEFREE These findings suggest that A3A is associated with a good prognosis in ERα-positive OPC, and indicate the prognostic significance of ERα in HPV-positive OPC. 31228270

2019

Entrez Id: 841
Gene Symbol: CASP8
CASP8
CUI: C0153382
Disease: Malignant neoplasm of oropharynx
Malignant neoplasm of oropharynx
0.010 GeneticVariation BEFREE CASP8 (rs3834129) and CASP3 (rs4647601) polymorphisms in oropharynx cancer risk, tumor cell differentiation, and prognosis in a cohort of the Brazilian population. 31587185

2019

Entrez Id: 1401
Gene Symbol: CRP
CRP
CUI: C0153382
Disease: Malignant neoplasm of oropharynx
Malignant neoplasm of oropharynx
0.010 Biomarker BEFREE C-reactive Protein in HPV-Positive and HPV-Negative Oropharyngeal Cancer. 30226795

2019

Entrez Id: 80316
Gene Symbol: PPP1R2C
PPP1R2C
CUI: C0153382
Disease: Malignant neoplasm of oropharynx
Malignant neoplasm of oropharynx
0.010 Biomarker BEFREE Ninety-seven patients enrolled on an IRB-approved prospective registry protocol with stage I-IV OPC underwent pre- and 3-6 month post-RT videofluoroscopy. 29961581

2018

Entrez Id: 5294
Gene Symbol: PIK3CG
PIK3CG
CUI: C0153382
Disease: Malignant neoplasm of oropharynx
Malignant neoplasm of oropharynx
0.010 GeneticVariation BEFREE PI3K pathway alterations were associated with improved outcomes among metastatic HPV+ OPC patients. 30185662

2018

Entrez Id: 595
Gene Symbol: CCND1
CCND1
CUI: C0153382
Disease: Malignant neoplasm of oropharynx
Malignant neoplasm of oropharynx
0.010 Biomarker BEFREE Potential clinical implications of HPV status and expressions of p53 and cyclin D1 among oropharyngeal cancer patients. 30191616

2018

Entrez Id: 406938
Gene Symbol: MIR146A
MIR146A
CUI: C0153382
Disease: Malignant neoplasm of oropharynx
Malignant neoplasm of oropharynx
0.010 Biomarker BEFREE A differentiated expression of miR-122-5p between oral cancer and oropharynx cancer (AUC of 0.96 p = 0.01) was found: miR-124-3p between larynx and pharynx (AUC = 0.97, p < 0.01) and miR-146a-5p between larynx, oropharynx, and oral cavity (AUC = 0.96, p = 0.01). 30584540

2018

Entrez Id: 2305
Gene Symbol: FOXM1
FOXM1
CUI: C0153382
Disease: Malignant neoplasm of oropharynx
Malignant neoplasm of oropharynx
0.010 AlteredExpression BEFREE Collectively, these results indicate that HPV-16 induces FoxM1B in part through GRHL2 transcriptional activity and that elevated FoxM1B level is required for oropharyngeal cancer development. 29443638

2018

Entrez Id: 79977
Gene Symbol: GRHL2
GRHL2
CUI: C0153382
Disease: Malignant neoplasm of oropharynx
Malignant neoplasm of oropharynx
0.010 AlteredExpression BEFREE Collectively, these results indicate that HPV-16 induces FoxM1B in part through GRHL2 transcriptional activity and that elevated FoxM1B level is required for oropharyngeal cancer development. 29443638

2018

Entrez Id: 5293
Gene Symbol: PIK3CD
PIK3CD
CUI: C0153382
Disease: Malignant neoplasm of oropharynx
Malignant neoplasm of oropharynx
0.010 GeneticVariation BEFREE PI3K pathway alterations were associated with improved outcomes among metastatic HPV+ OPC patients. 30185662

2018

Entrez Id: 5291
Gene Symbol: PIK3CB
PIK3CB
CUI: C0153382
Disease: Malignant neoplasm of oropharynx
Malignant neoplasm of oropharynx
0.010 GeneticVariation BEFREE PI3K pathway alterations were associated with improved outcomes among metastatic HPV+ OPC patients. 30185662

2018

Entrez Id: 5133
Gene Symbol: PDCD1
PDCD1
CUI: C0153382
Disease: Malignant neoplasm of oropharynx
Malignant neoplasm of oropharynx
0.010 Biomarker BEFREE Infiltration of PD-1-expressing lymphocytes correlates significantly with favourable OS (P = 0.001) and DFS (P = 0.001) in oropharyngeal cancer and hypopharyngeal cancer patients OS (P = 0.007) and DFS (P = 0.001). 29742291

2018

Entrez Id: 574454
Gene Symbol: MIR496
MIR496
CUI: C0153382
Disease: Malignant neoplasm of oropharynx
Malignant neoplasm of oropharynx
0.010 AlteredExpression BEFREE Human papillomavirus 16 E6 modulates the expression of miR-496 in oropharyngeal cancer. 29935424

2018

Entrez Id: 406963
Gene Symbol: MIR187
MIR187
CUI: C0153382
Disease: Malignant neoplasm of oropharynx
Malignant neoplasm of oropharynx
0.010 GeneticVariation BEFREE A TGF-β1 genetic variant at the miRNA187 binding site significantly modifies risk of HPV16-associated oropharyngeal cancer. 29663347

2018

Entrez Id: 1869
Gene Symbol: E2F1
E2F1
CUI: C0153382
Disease: Malignant neoplasm of oropharynx
Malignant neoplasm of oropharynx
0.010 Biomarker BEFREE The Modifying Effect of a Functional Variant at the miRNA Binding Site in E2F1 Gene on Recurrence of Oropharyngeal Cancer Patients with Definitive Radiotherapy. 29574328

2018

Entrez Id: 5591
Gene Symbol: PRKDC
PRKDC
CUI: C0153382
Disease: Malignant neoplasm of oropharynx
Malignant neoplasm of oropharynx
0.010 GeneticVariation BEFREE Nonexclusive somatic alterations in KMT2D and PIK3CA were most frequent, with PRKDC alterations occurring at higher frequency when compared with all sequenced HPV+ OPC patients. 30185662

2018

Entrez Id: 140885
Gene Symbol: SIRPA
SIRPA
CUI: C0153382
Disease: Malignant neoplasm of oropharynx
Malignant neoplasm of oropharynx
0.010 AlteredExpression BEFREE Enhanced expression of MUC16, SIRPA and HPV-16-E7 protein was detectable in the circulating exosomes of numerous HPVOPC subjects. 28383029

2017

Entrez Id: 190
Gene Symbol: NR0B1
NR0B1
CUI: C0153382
Disease: Malignant neoplasm of oropharynx
Malignant neoplasm of oropharynx
0.010 Biomarker BEFREE Of note, OS and DSS of the patients with p16-negative OPC and heterozygous ALDH2 was significant poorer than those of the patients with p16-positive OPC (p = 0.002, 0.006, respectively), while there was no significant difference in OS and DSS between patients with p16-positive OPC and patients with p16-negative OPC and homozygous ALDH2. 29206831

2017

Entrez Id: 4851
Gene Symbol: NOTCH1
NOTCH1
CUI: C0153382
Disease: Malignant neoplasm of oropharynx
Malignant neoplasm of oropharynx
0.010 Biomarker BEFREE Notch1 Overexpression Correlates to Improved Survival in Cancer of the Oropharynx. 28195818

2017