Gene Disease Score gda Association Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 125
Gene Symbol: ADH1B
ADH1B
CUI: C0153382
Disease: Malignant neoplasm of oropharynx
Malignant neoplasm of oropharynx
0.110 GeneticVariation GWASCAT Genome-wide association analyses identify new susceptibility loci for oral cavity and pharyngeal cancer. 27749845

2016

Entrez Id: 125
Gene Symbol: ADH1B
ADH1B
CUI: C0153382
Disease: Malignant neoplasm of oropharynx
Malignant neoplasm of oropharynx
0.110 Biomarker BEFREE Among moderate-to-heavy drinkers, men with the less-active ADH1B*1/*1 had a significantly higher risk of the cancers overall, of hypopharyngeal cancer, and of oral/oropharyngeal cancer (OR = 5.56, 7.21 and 4.24, respectively). 17071628

2007

Entrez Id: 126
Gene Symbol: ADH1C
ADH1C
CUI: C0153382
Disease: Malignant neoplasm of oropharynx
Malignant neoplasm of oropharynx
0.010 GeneticVariation BEFREE In addition, the oropharyngeal cancer patients had excess frequencies of both GSTmu(-) (62%) and ADH(3)1/ADH(3)1 (43%) relative to the control group, but these excess frequencies were not statistically significant. 9050916

1997

Entrez Id: 128
Gene Symbol: ADH5
ADH5
CUI: C0153382
Disease: Malignant neoplasm of oropharynx
Malignant neoplasm of oropharynx
0.010 GeneticVariation BEFREE In addition, the oropharyngeal cancer patients had excess frequencies of both GSTmu(-) (62%) and ADH(3)1/ADH(3)1 (43%) relative to the control group, but these excess frequencies were not statistically significant. 9050916

1997

Entrez Id: 217
Gene Symbol: ALDH2
ALDH2
CUI: C0153382
Disease: Malignant neoplasm of oropharynx
Malignant neoplasm of oropharynx
0.010 Biomarker BEFREE Of note, OS and DSS of the patients with p16-negative OPC and heterozygous ALDH2 was significant poorer than those of the patients with p16-positive OPC (p = 0.002, 0.006, respectively), while there was no significant difference in OS and DSS between patients with p16-positive OPC and patients with p16-negative OPC and homozygous ALDH2. 29206831

2017

Entrez Id: 200315
Gene Symbol: APOBEC3A
APOBEC3A
CUI: C0153382
Disease: Malignant neoplasm of oropharynx
Malignant neoplasm of oropharynx
0.010 Biomarker BEFREE These findings suggest that A3A is associated with a good prognosis in ERα-positive OPC, and indicate the prognostic significance of ERα in HPV-positive OPC. 31228270

2019

Entrez Id: 100913187
Gene Symbol: APOBEC3A_B
APOBEC3A_B
CUI: C0153382
Disease: Malignant neoplasm of oropharynx
Malignant neoplasm of oropharynx
0.010 Biomarker BEFREE These findings suggest that A3A is associated with a good prognosis in ERα-positive OPC, and indicate the prognostic significance of ERα in HPV-positive OPC. 31228270

2019

Entrez Id: 83478
Gene Symbol: ARHGAP24
ARHGAP24
CUI: C0153382
Disease: Malignant neoplasm of oropharynx
Malignant neoplasm of oropharynx
0.020 GeneticVariation BEFREE The results from this study showed both p53 variant genotypes (Arg/Pro+Pro/Pro) and p73 variant genotypes (GC/AT+AT/AT) were significantly associated with HPV16-positive tumor in oropharyngeal cancer patients (OR, 1.9, 95% CI, 1.1-3.3 and OR, 2.1, 95% CI, 1.2-3.8, respectively), while the combined variant genotypes (p53 Pro carriers and p73 AT carriers) exhibited a significantly greater association with HPV16-positive tumor (OR, 3.2, 95% CI, 1.4-7.4), compared with combined wild-type genotypes (p53 Arg/Arg and p73 GC/GC), and the association was in a statistically significant dose-effect relationship (p = 0.001). 22523600

2012

Entrez Id: 83478
Gene Symbol: ARHGAP24
ARHGAP24
CUI: C0153382
Disease: Malignant neoplasm of oropharynx
Malignant neoplasm of oropharynx
0.020 GeneticVariation BEFREE The p73 polymorphism was associated with HPV-16 status in SCCHN and may serve as a marker of positive HPV-16 tumor status in patients with SCCHN, particularly those with oropharyngeal cancer. 19197996

2009

Entrez Id: 545
Gene Symbol: ATR
ATR
CUI: C0153382
Disease: Malignant neoplasm of oropharynx
Malignant neoplasm of oropharynx
0.010 GeneticVariation BEFREE Germline mutation in ATR in autosomal- dominant oropharyngeal cancer syndrome. 22341969

2012

Entrez Id: 27113
Gene Symbol: BBC3
BBC3
CUI: C0153382
Disease: Malignant neoplasm of oropharynx
Malignant neoplasm of oropharynx
0.010 Biomarker BEFREE Our results suggested that the PUMA promoter polymorphisms may be a biomarker for risk of HPV16-associated SCCHN, particularly in never smokers, never drinkers, younger patients, and patients with oropharyngeal cancer. 22086558

2012

Entrez Id: 596
Gene Symbol: BCL2
BCL2
CUI: C0153382
Disease: Malignant neoplasm of oropharynx
Malignant neoplasm of oropharynx
0.020 Biomarker BEFREE Bcl2 and human papilloma virus 16 as predictors of outcome following concurrent chemoradiation for advanced oropharyngeal cancer. 20233885

2010

Entrez Id: 596
Gene Symbol: BCL2
BCL2
CUI: C0153382
Disease: Malignant neoplasm of oropharynx
Malignant neoplasm of oropharynx
0.020 AlteredExpression BEFREE P53, class III beta-tubulin and bcl-2 were differently expressed in OPC according to HPV status and present study suggested the underlying mechanism of better response to chemotherapy in case of HPV OPC than non-HPV OPC. 25380690

2014

Entrez Id: 836
Gene Symbol: CASP3
CASP3
CUI: C0153382
Disease: Malignant neoplasm of oropharynx
Malignant neoplasm of oropharynx
0.010 GeneticVariation BEFREE CASP8 (rs3834129) and CASP3 (rs4647601) polymorphisms in oropharynx cancer risk, tumor cell differentiation, and prognosis in a cohort of the Brazilian population. 31587185

2019

Entrez Id: 841
Gene Symbol: CASP8
CASP8
CUI: C0153382
Disease: Malignant neoplasm of oropharynx
Malignant neoplasm of oropharynx
0.010 GeneticVariation BEFREE CASP8 (rs3834129) and CASP3 (rs4647601) polymorphisms in oropharynx cancer risk, tumor cell differentiation, and prognosis in a cohort of the Brazilian population. 31587185

2019

Entrez Id: 595
Gene Symbol: CCND1
CCND1
CUI: C0153382
Disease: Malignant neoplasm of oropharynx
Malignant neoplasm of oropharynx
0.010 Biomarker BEFREE Potential clinical implications of HPV status and expressions of p53 and cyclin D1 among oropharyngeal cancer patients. 30191616

2018

Entrez Id: 29126
Gene Symbol: CD274
CD274
CUI: C0153382
Disease: Malignant neoplasm of oropharynx
Malignant neoplasm of oropharynx
0.020 AlteredExpression BEFREE Our findings suggested that different immune profiles in oropharyngeal cancer by HPV status and the effect of HPV on the outcomes is modified by PD-L1 expression. 31010620

2019

Entrez Id: 29126
Gene Symbol: CD274
CD274
CUI: C0153382
Disease: Malignant neoplasm of oropharynx
Malignant neoplasm of oropharynx
0.020 Biomarker BEFREE Tumor PD-L1 status and CD8<sup>+</sup> tumor-infiltrating T cells: markers of improved prognosis in oropharyngeal cancer. 29113315

2017

Entrez Id: 1029
Gene Symbol: CDKN2A
CDKN2A
CUI: C0153382
Disease: Malignant neoplasm of oropharynx
Malignant neoplasm of oropharynx
0.100 GeneticVariation BEFREE Recently, the eighth edition of the American Joint Committee on Cancer/Union for International Cancer Control (AJCC/UICC) tumor-node-metastasis (TNM) staging system for OPC (based on the p16INK4a (p16) status) was proposed and has been implemented. 30987261

2019

Entrez Id: 1029
Gene Symbol: CDKN2A
CDKN2A
CUI: C0153382
Disease: Malignant neoplasm of oropharynx
Malignant neoplasm of oropharynx
0.100 Biomarker BEFREE For p16(INK4A), 85 of 200 (42.5%) patients were found to be p16 positive, including 75 of 131 (57%) with oropharyngeal cancer. 21467228

2011

Entrez Id: 1029
Gene Symbol: CDKN2A
CDKN2A
CUI: C0153382
Disease: Malignant neoplasm of oropharynx
Malignant neoplasm of oropharynx
0.100 AlteredExpression BEFREE Impact of p16 expression in oropharyngeal cancer in the postoperative setting: the necessity of re-evaluating traditional risk stratification. 27474125

2016

Entrez Id: 1029
Gene Symbol: CDKN2A
CDKN2A
CUI: C0153382
Disease: Malignant neoplasm of oropharynx
Malignant neoplasm of oropharynx
0.100 Biomarker BEFREE Among these biomarkers, p53 is the strongest prognostic marker in OPC and p53 in addition to p16 support the rationale to study of de-escalation strategy for OPC. 25380690

2014

Entrez Id: 1029
Gene Symbol: CDKN2A
CDKN2A
CUI: C0153382
Disease: Malignant neoplasm of oropharynx
Malignant neoplasm of oropharynx
0.100 GeneticVariation BEFREE Patients with OPC with available p16 status and tobacco history were eligible. 30913305

2019

Entrez Id: 1029
Gene Symbol: CDKN2A
CDKN2A
CUI: C0153382
Disease: Malignant neoplasm of oropharynx
Malignant neoplasm of oropharynx
0.100 GeneticVariation BEFREE Overall, this study provides evidence of epigenetic changes to the downstream region of the CDKN2A locus in HPV+ oropharyngeal cancer that are associated with changes in expression of the coded protein products. 25619363

2015

Entrez Id: 1029
Gene Symbol: CDKN2A
CDKN2A
CUI: C0153382
Disease: Malignant neoplasm of oropharynx
Malignant neoplasm of oropharynx
0.100 Biomarker BEFREE Population-based p16 and HPV positivity rates in oropharyngeal cancer in Southeast Scotland. 26152733

2015